Discovery of benzimidazole-diamide finger loop (Thumb Pocket I) allosteric inhibitors of HCV NS5B polymerase: Implementing parallel synthesis for rapid linker optimization

Bioorg Med Chem Lett. 2010 Jan 1;20(1):196-200. doi: 10.1016/j.bmcl.2009.10.136. Epub 2009 Nov 4.

Abstract

Previously described SAR of benzimidazole-based non-nucleoside finger loop (Thumb Pocket I) inhibitors of HCV NS5B polymerase was expanded. Prospecting studies using parallel synthesis techniques allowed the rapid identification of novel cinnamic acid right-hand sides that provide renewed opportunities for further optimization of these inhibitors. Novel diamide derivatives such as 44 exhibited comparable potency (enzymatic and cell-based HCV replicon) as previously described tryptophan-based inhibitors but physicochemical properties (e.g., aqueous solubility and lipophilicity) have been improved, resulting in molecules with reduced off-target liabilities (CYP inhibition) and increased metabolic stability.

MeSH terms

  • Allosteric Regulation
  • Antiviral Agents / chemical synthesis*
  • Antiviral Agents / chemistry
  • Antiviral Agents / pharmacology
  • Benzimidazoles / chemistry*
  • Cinnamates / chemistry
  • Diamide / chemical synthesis*
  • Diamide / chemistry
  • Diamide / pharmacology
  • Drug Discovery
  • Enzyme Inhibitors / chemical synthesis*
  • Enzyme Inhibitors / chemistry
  • Enzyme Inhibitors / pharmacology
  • Humans
  • Microsomes, Liver / metabolism
  • Protein Structure, Tertiary
  • Structure-Activity Relationship
  • Viral Nonstructural Proteins / antagonists & inhibitors*
  • Viral Nonstructural Proteins / metabolism

Substances

  • Antiviral Agents
  • Benzimidazoles
  • Cinnamates
  • Enzyme Inhibitors
  • Viral Nonstructural Proteins
  • Diamide
  • cinnamic acid
  • NS-5 protein, hepatitis C virus